What’s the purpose of the container image in this setup? It sounds like it exists just to make the certificate directory, so the container feels like overkill when compared to a tarball, or a self-extracting archive.
You're right, it's a little weird. I wrote a short essay about my setup[1] but the tl;dr is that I wanted certificates distributed in the same way every other thing on my machines is distributed.
I wanted my homeprod setup to be as hands off as possible while still allowing easy management. Each physical host is running Alpine. During provisioning I install docker, Tailscale, and manually start a "root" container that runs[2] docker compose and then starts a cron daemon. The compose commands include one or more "stack" files and are generated based on a yaml file listing the stacks for each host. Watchtower runs with a 30 second cycle time to keep everything updated, including the root container. Adding or updating services means committing and pushing a change to the root container repo, then CI builds and pushes a new image. Watchtower picks up the new image and restarts the root container, which re-runs Compose which in turn starts, stops, modifies, etc anything that's changed.
For certificates, I tried a number of different things but ultimately settled on the method I described earlier. The purpose of the container image is to 1) transport the certificates and install them in the right spot and 2) be updatable automatically with Watchtower.
Certificate changes are very similar to the root container, except the git repo self-modifies upon renewals (yes I keep private keys committed to git, it's a homelab, it's really not a big deal).